Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922381.1_cds_XP_016471149.1_63522
CDS Infomation

[gene=LOC107793338] [db_xref=GeneID:107793338] [protein=nephrocystin-3-like isoform X3] [protein_id=XP_016471149.1] [location=complement(join(12281..12531,12741..13072,13883..14018,14439..14530,14627..14849,15132..15282,15593..15860,17135..17365,17458..17519))] [gbkey=CDS]
Sequence

ATGTCTACTTCTCCAGCCTCTCCTACTCCTCGCACCTTTTGCTCACTCACCAATTCCTGC
AGGACGAGTCTTGTATCTTTAAATACCCATAATAATATTGGCCGACTACCCAAAGGCATA
TTGTCTGTCACCTTTTATCACCGTCCATCTCAAAGTTGCAATTTTAAGCTTTGCTTTCCT
ACTGGTGGGCTGTTTTTCCCTTTTTGCAAAAGGGGTTGTGTTGTGTCAGCTGCTTCACCC
AAATTGTACGGAAACAAACGGTATCAACTTAATTCAAGTCTTGGTTCTCAGAGCAGTTAC
ACGGATTTAAAGGACAATGTGCCTAGCAGTCTGCATATTCTCGAGGAGCAGCTGAGGGAT
TTATTTAATGAAGTCCATGCCATGATAAGAATAGGGAAGGAAAATGAGGCCAGAGATCTG
CTTCTAGCGAATTATGAAGCTGTCAAAGAACAGATAGATGCAGGTAACAAGGGTATAGAA
GAAGCTGCTATTCTTGATGTAACAGCCTTGGGATACATGGCTCTTGGGGATACAAGTTCT
GTCAAACCCCTGTTGGATGCGTTGGGCGAGATTGTTGATGACTTGAAAGATGAGGAGCCT
CTTCTGGACTCGATACTCACACATATGGGTAATATGTATGAAAAATTGGAAAATTTTGAG
ATGTCCATTTGTCTCTATGGAAGAGCTGTCAAAGTTATTGAGAGACTCTATGGAAATACC
AGTTCTTTTATCGTCACTCCATTGTTAGGGATGGCAAAAGTCCTGGGTTCTAATCGAAAG
ACCACAAAAGCAATAGAGGCATACCATCGTGTGGTTAAAATACTCGAATCTAGCAGGGGT
GAAGAAAGTGAAGAATTGGTAGTTCCTTTATTTGCGATGGGCAATCTTCTTCTGAAGGAA
GGGAGAGTGGCTGATGCAGAAAATGCTTTTAATAGAATTTTGACCACATACATGAAGTTA
TATGGAGAAAATGATGGCAGAGTTGGACTGTCTATGAGTTATCTTGCACGTGCAAAATGT
GCAAAAGGAGACGTGAATGAAGCCATTGAGCTGTATAAAGAGGCTCTTCGTAGGCTGAAA
GATTCTGATTATATAGCCATAGATGATCAAATAATGGAGAAGATGAGAGTAGACTTGGCT
GAATTGCTTCATGTGGTTGGAAGAGGTGAAGAAGGCCGCCTGCTACTGGAGGAATGCTTG
TTGATAACTGAGAAGTTCAAGGGAGAGGGGCATCCCAGTTCAGTCTCCCATTTAGTGAAT
CTAGCCACTTCTTATTCACAGTCCAAAAGATTTGCAGAAGCTGAGCGCATGCTGAGGATG
AGTTTGCAGATTATGTTGAAGAATGTTTCACCTGATGATCAATCCATTACTTTCCCAATG
CTGCATCTTGCAGTTACTCTCTACAATCTAAACCGTAGCGAGGAAGCCGAAAAATATGCA
TTAGAGGTTCTGCAAATCCGTGAGAAGGCATTTGGGAAAGATTCTCTACCAGTTGGGGAG
GCTCTTGACTGTTTGGTCTCCATTCAGACCCAGCTGGGAAAGGATGACGGTGAATTGCTA
GAGTTGCTCAAGAGAGTACTGAAAATTCAAGAGAAAGCTTTTGGTACTGATAGCGAGGAA
GTCATGGAAACACTTAAAAAGATTGTATATTACTTGGAGAAGATGGGGAGGAGACATGAC
AAACTCCCTCTGCAAAGAAGATTATCAAAGCTCAGAAGTAAATATAACCAAATGGTTCAA
TATTAA

Peptide Sequence

PEP ID

XP_016471149.1
PEP Infomation

PREDICTED: nephrocystin-3-like isoform X3 [Nicotiana tabacum]
Sequence

MSTSPASPTPRTFCSLTNSCRTSLVSLNTHNNIGRLPKGILSVTFYHRPSQSCNFKLCFP
TGGLFFPFCKRGCVVSAASPKLYGNKRYQLNSSLGSQSSYTDLKDNVPSSLHILEEQLRD
LFNEVHAMIRIGKENEARDLLLANYEAVKEQIDAGNKGIEEAAILDVTALGYMALGDTSS
VKPLLDALGEIVDDLKDEEPLLDSILTHMGNMYEKLENFEMSICLYGRAVKVIERLYGNT
SSFIVTPLLGMAKVLGSNRKTTKAIEAYHRVVKILESSRGEESEELVVPLFAMGNLLLKE
GRVADAENAFNRILTTYMKLYGENDGRVGLSMSYLARAKCAKGDVNEAIELYKEALRRLK
DSDYIAIDDQIMEKMRVDLAELLHVVGRGEEGRLLLEECLLITEKFKGEGHPSSVSHLVN
LATSYSQSKRFAEAERMLRMSLQIMLKNVSPDDQSITFPMLHLAVTLYNLNRSEEAEKYA
LEVLQIREKAFGKDSLPVGEALDCLVSIQTQLGKDDGELLELLKRVLKIQEKAFGTDSEE
VMETLKKIVYYLEKMGRRHDKLPLQRRLSKLRSKYNQMVQY

Transcript Sequence

Gene sequence data has not been registered.